{"id":671,"date":"2025-09-24T23:09:14","date_gmt":"2025-09-24T21:09:14","guid":{"rendered":"https:\/\/egm.ibpc.fr\/?page_id=671"},"modified":"2025-09-30T15:25:32","modified_gmt":"2025-09-30T13:25:32","slug":"epics-publications","status":"publish","type":"page","link":"https:\/\/egm.ibpc.fr\/?page_id=671","title":{"rendered":"Publications"},"content":{"rendered":"\n
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Journal articles<\/p>

2025<\/p>

Louna Fruchard, Claudia Sudol, Caroline Rouard, Aurore Treffkorn-Maurau, L\u00e9o Hardy, et al.. Beyond RNA modification: a novel role for tRNA modifying enzyme in oxidative stress response and metabolism. Nucleic Acids Research<\/i>, 2025, 53 (22), pp.gkaf1276. ⟨10.1093\/nar\/gkaf1276⟩<\/a>. ⟨pasteur-05438616⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
L\u00e9o Hardy, Virginie Marchand, Val\u00e9rie Bourguignon, Quentin Thuillier, Cathy Dias, et al.. The tRNA epitranscriptomic landscape and RNA modification enzymes in Vibrio cholerae. PLoS Genetics<\/i>, 2025, 21 (10), pp.e1011937. ⟨10.1371\/journal.pgen.1011937⟩<\/a>. ⟨pasteur-05347080⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Louna Fruchard, Claudia Salinas, Andre Carvalho, Zeynep Baharoglu. tRNA-modifying enzymes in bacterial stress adaptation. Open Biology<\/i>, 2025, 15 (10), pp.250194. ⟨10.1098\/rsob.250194⟩<\/a>. ⟨pasteur-05347156⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Manon Lang, St\u00e9phane Renard, Imane El-Meouche, Ariane Amoura, Erick Denamur, et al.. Uridine as a potentiator of aminoglycosides through activation of carbohydrate transporters. Science Advances <\/i>, 2025, 11 (36), pp.eadw7630. ⟨10.1126\/sciadv.adw7630⟩<\/a>. ⟨pasteur-05347101⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Louna Fruchard, Anamaria Babosan, Andre Carvalho, Manon Lang, Blaise Li, et al.. Aminoglycoside tolerance in Vibrio cholerae engages translational reprogramming associated with queuosine tRNA modification. eLife<\/i>, 2025, 13, pp.RP96317. ⟨10.7554\/eLife.96317.3⟩<\/a>. ⟨hal-05029047⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2024<\/p>

Kevin Debatisse, Th\u00e9ophile Niault, Sarah Peeters, Amandine Maire, Busra Toktas, et al.. Fine-tuning of a CRISPRi screen in the seventh pandemic Vibrio cholerae. BMC Genomics<\/i>, 2024, 25 (1), pp.985. ⟨10.1186\/s12864-024-10891-1⟩<\/a>. ⟨pasteur-05116026⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Lena Le Quellec, Andrey Aristov, Salom\u00e9 Guti\u00e9rrez Ramos, Gabriel Amselem, Julia Bos, et al.. Measuring single-cell susceptibility to antibiotics within monoclonal bacterial populations. PLoS ONE<\/i>, 2024, 19 (8), pp.e0303630. ⟨10.1371\/journal.pone.0303630⟩<\/a>. ⟨pasteur-04739933v2⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Sabrine Toubdji, Quentin Thullier, Lea-Marie Kilz, V. Marchand, Yifeng Yuan, et al.. Exploring a unique class of flavoenzymes: Identification and biochemical characterization of ribosomal RNA dihydrouridine synthase. Proceedings of the National Academy of Sciences of the United States of America<\/i>, 2024, 121 (32), pp.e2401981121. ⟨10.1073\/pnas.2401981121⟩<\/a>. ⟨hal-04734945⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2023<\/p>

Evelyne Krin, Andr\u00e9 Carvalho, Manon Lang, Anamaria Babosan, Didier Mazel, et al.. RavA\u2010ViaA antibiotic response is linked to Cpx and Zra2 envelope stress systems in Vibrio cholerae. Microbiology Spectrum<\/i>, 2023, 11 (6), pp.e01730-23. ⟨10.1128\/spectrum.01730-23⟩<\/a>. ⟨pasteur-04260034⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Manon Lang, Andr\u00e9 Carvalho, Zeynep Baharoglu, Didier Mazel. Aminoglycoside uptake, stress, and potentiation in Gram-negative bacteria: new therapies with old molecules. Microbiology and Molecular Biology Reviews<\/i>, 2023, ⟨10.1128\/mmbr.00036-22⟩<\/a>. ⟨pasteur-04334889⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Evelyne Krin, Zeynep Baharoglu, Odile Sismeiro, Hugo Varet, Jean-Yves Copp\u00e9e, et al.. Systematic transcriptome analysis allows the identification of new type I and type II Toxin\/Antitoxin systems located in the superintegron of Vibrio cholerae. Research in Microbiology<\/i>, 2023, 174 (1-2), pp.103997. ⟨10.1016\/j.resmic.2022.103997⟩<\/a>. ⟨pasteur-03889562⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2022<\/p>

Anamaria Babosan, Louna Fruchard, Evelyne Krin, Andr\u00e9 Carvalho, Didier Mazel, et al.. Non-essential tRNA and rRNA modifications impact the bacterial response to sub-MIC antibiotic stress. microLife<\/i>, 2022, 3, pp.uqac019. ⟨10.1093\/femsml\/uqac019⟩<\/a>. ⟨pasteur-03897869v2⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Anamaria Babosan, David Skurnik, Ana\u00eblle Muggeo, Gerald Pier, Zeynep Baharoglu, et al.. A qnr-plasmid allows aminoglycosides to induce SOS in Escherichia coli. eLife<\/i>, 2022, 11, ⟨10.7554\/eLife.69511⟩<\/a>. ⟨hal-03919325⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2021<\/p>

Andr\u00e9 Carvalho, Evelyne Krin, Chlo\u00e9 Korlowski, Didier Mazel, Zeynep Baharoglu. Interplay between Sublethal Aminoglycosides and Quorum Sensing: Consequences on Survival in V. cholerae. Cells<\/i>, 2021, 10 (11), pp.3227. ⟨10.3390\/cells10113227⟩<\/a>. ⟨pasteur-03443810v2⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Andr\u00e9 Carvalho, Didier Mazel, Zeynep Baharoglu. Deficiency in cytosine DNA methylation leads to high chaperonin expression and tolerance to aminoglycosides in Vibrio cholerae. PLoS Genetics<\/i>, 2021, 17 (10), pp.e1009748. ⟨10.1371\/journal.pgen.1009748⟩<\/a>. ⟨pasteur-03417428v2⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Manon Lang, Evelyne Krin, Chlo\u00e9 Korlowski, Odile Sismeiro, Hugo Varet, et al.. Sleeping ribosomes: bacterial signaling triggers RaiA mediated persistence to aminoglycosides. iScience<\/i>, 2021, pp.103128. ⟨10.1016\/j.isci.2021.103128⟩<\/a>. ⟨pasteur-03349141⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2019<\/p>

Veronica Negro, Evelyne Krin, Sebastian Aguilar Pierl\u00e9, Thibault Chaze, Quentin Giai Gianetto, et al.. RadD Contributes to R-Loop Avoidance in Sub-MIC Tobramycin. mBio<\/i>, 2019, 10 (4), pp.e01173-19. ⟨10.1128\/mBio.01173-19⟩<\/a>. ⟨pasteur-02171194⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2014<\/p>

Zeynep Baharoglu, Didier Mazel. SOS, the formidable strategy of bacteria against aggressions. FEMS Microbiology Reviews<\/i>, 2014, 38 (6), pp.1126-1145. ⟨10.1111\/1574-6976.12077⟩<\/a>. ⟨pasteur-01423593⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Zeynep Baharoglu, Didier Mazel. Influence of very short patch mismatch repair on SOS inducing lesions after aminoglycoside treatment in Escherichia coli.. Research in Microbiology<\/i>, 2014, 165 (6), pp.476-80. ⟨10.1016\/j.resmic.2014.05.039⟩<\/a>. ⟨pasteur-01423361⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Z. Baharoglu, A. Babosan, D. Mazel. Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: a role for transcription stalling and Mfd helicase.. Nucleic Acids Research<\/i>, 2014, 42 (4), pp.2366-2379. ⟨10.1093\/nar\/gkt1259⟩<\/a>. ⟨pasteur-01423602⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2013<\/p>

Zeynep Baharoglu, Genevi\u00e8ve Garriss, Didier Mazel. Multiple Pathways of Genome Plasticity Leading to Development of Antibiotic Resistance. Antibiotics<\/i>, 2013, Antibiotic Resistance, 2 (2), pp.288-315. ⟨10.3390\/antibiotics2020288⟩<\/a>. ⟨pasteur-01691592⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Zeynep Baharoglu, Evelyne Krin, Didier Mazel. RpoS Plays a Central Role in the SOS Induction by Sub-Lethal Aminoglycoside Concentrations in Vibrio cholerae. PLoS Genetics<\/i>, 2013, 9 (4), pp.e1003421. ⟨10.1371\/journal.pgen.1003421⟩<\/a>. ⟨pasteur-01691109⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
A. Gutierrez, L. Laureti, S. Crussard, H. Abida, A. Rodr\u00edguez-Rojas, et al.. \u03b2-lactam antibiotics promote bacterial mutagenesis via an RpoS-mediated reduction in replication fidelity. Nature Communications<\/i>, 2013, 4, pp.1610. ⟨10.1038\/ncomms2607⟩<\/a>. ⟨pasteur-01691736⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2012<\/p>

Zeynep Baharoglu, Evelyne Krin, Didier Mazel. Connecting Environment and Genome Plasticity in the Characterization of Transformation-Induced SOS Regulation and Carbon Catabolite Control of the Vibrio cholerae Integron Integrase. Journal of Bacteriology<\/i>, 2012, 194 (7), pp.1659-1667. ⟨10.1128\/JB.05982-11⟩<\/a>. ⟨pasteur-03941970⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2011<\/p>

Zeynep Baharoglu, Didier Mazel. Vibrio cholerae triggers SOS and mutagenesis in response to a wide range of antibiotics: a route towards multiresistance.. Antimicrobial Agents and Chemotherapy<\/i>, 2011, 55 (5), pp.2438-2441. ⟨10.1128\/AAC.01549-10⟩<\/a>. ⟨pasteur-01423615⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2010<\/p>

David Bikard, C\u00e9line Loot, Zeynep Baharoglu, Didier Mazel. Folded DNA in Action: Hairpin Formation and Biological Functions in Prokaryotes. Microbiology and Molecular Biology Reviews<\/i>, 2010, 74 (4), pp.570-588. ⟨10.1128\/MMBR.00026-10⟩<\/a>. ⟨pasteur-02505407⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Zeynep Baharoglu, David Bikard, Didier Mazel. Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation. PLoS Genetics<\/i>, 2010, 6 (10), pp.e1001165. ⟨10.1371\/journal.pgen.1001165⟩<\/a>. ⟨pasteur-02477623⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>
Zeynep Baharoglu, Roxane Lestini, St\u00e9phane Duigou, B\u00e9n\u00e9dicte Michel. RNA polymerase mutations that facilitate replication progression in the rep uvrD recF mutant lacking two accessory replicative helicases. Molecular Microbiology<\/i>, 2010, 77 (2), pp.324. ⟨10.1111\/j.1365-2958.2010.07208.x⟩<\/a>. ⟨hal-00552639⟩<\/a> \"PDF\"<\/a><\/dd><\/dl>

2007<\/p>

B\u00e9n\u00e9dicte Michel, Hasna Boubakri, Zeynep Baharoglu, Marie Lemasson, Roxane Lestini. Recombination proteins and rescue of arrested replication forks.. DNA Repair<\/i>, 2007, 6 (7), pp.967-80. ⟨10.1016\/j.dnarep.2007.02.016⟩<\/a>. ⟨hal-00167418⟩<\/a><\/dd><\/dl>

2006<\/p>

Zeynep Baharoglu, Mirjana Petranovic, Maria-Jose Flores, B\u00e9n\u00e9dicte Michel. RuvAB is essential for replication forks reversal in certain replication mutants.. EMBO Journal<\/i>, 2006, 25 (3), pp.596-604. ⟨10.1038\/sj.emboj.7600941⟩<\/a>. ⟨hal-00130946⟩<\/a><\/dd><\/dl><\/div><\/em><\/p>\n\n\n\n

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